"LOOS: a tool for making new tools for analyzing molecular simulations", Tod D. Romo and Alan Grossfield, (pdf)
"Understanding the function of the cyclic antifungal lipopeptide fengycin using all-atom simulation", Sreyoshi Sur, Tod D. Romo and Alan Grossfield, (pdf)
"Dynamic ligand-protein interactions alter rhodopsin's conformational ensemble: Simulations of rhodopsin and opsin", Letty Salas-Estrada, Nicholas Leioatts, Tod D. Romo, Shairy Azmy Danial, and Alan Grossfield (pdf)
"Investigation of the mechanism of antimicrobial lipopeptides using coarse-grained molecular dynamics simulations", Dejun Lin and Alan Grossfield, (pdf)