"Investigation of the mechanism of antimicrobial lipopeptides using coarse-grained molecular dynamics simulations", Dejun Lin and Alan Grossfield, (pdf)
"Unraveling allostery with simulations of rhodopsin and opsin", Nicholas Leioatts, Tod D. Romo, and Alan Grossfield, (pdf)
"Simple models characterize the activation mechanism of G Protein-coupled receptors", Pooja Suresh, Nicholas Leioatts, and Alan Grossfield, (pdf)
"Covariance ratio analysis of active HIV-1 reverse transcriptase", James M. Seckler, Serdal Kirmizialtin, Patrick L. Wintrode, Kenneth Johnson, Alan Grossfield, (pdf)
"LOOS: a tool for making new tools for analyzing molecular simulations", Tod D. Romo and Alan Grossfield, (pdf)
"Retinal changes conformation during the early stages of rhodopsin activation", Nicholas Leioatts, Blake Mertz, Karina Martinez-Mayorga, Tod D. Romo, Michael C. Pitman, Scott E. Feller, Alan Grossfield, and Michael F. Brown, (pdf)